sequences aligned using clustalw Search Results


clustalw multiple sequence alignment algorithm  (Imgen Inc)
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Imgen Inc clustalw multiple sequence alignment algorithm
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clustalw amino acid sequence alignment  (Bioedit Company)
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Bioedit Company clustalw amino acid sequence alignment
The GenBank sequences of the NA of Solomon, Brisbane, Tennessee and California were aligned using the <t>clustalW</t> alignment program (BioEdit software, Windows 95/98/NT). Numbers to the left of each line indicates amino acid position. Gaps in the alignment are represented as dashed lines. A) Sequences that are shaded in grey indicate identical amino acids between the full length NA of H1N1 viruses. The black arrow indicates the starting sequences of the ectodomain for each virus strain (residue 82 to end).* assumption that the NA sequence of Solomon has identical residues at C-terminus. B) The percent identity of the NA ectodomain between Solomon, Brisbane, Tennessee viruses compared to California was calculated using BioEdit.
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sequences aligned using clustalw  (Bioedit Company)
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Bioedit Company sequences aligned using clustalw
The GenBank sequences of the NA of Solomon, Brisbane, Tennessee and California were aligned using the <t>clustalW</t> alignment program (BioEdit software, Windows 95/98/NT). Numbers to the left of each line indicates amino acid position. Gaps in the alignment are represented as dashed lines. A) Sequences that are shaded in grey indicate identical amino acids between the full length NA of H1N1 viruses. The black arrow indicates the starting sequences of the ectodomain for each virus strain (residue 82 to end).* assumption that the NA sequence of Solomon has identical residues at C-terminus. B) The percent identity of the NA ectodomain between Solomon, Brisbane, Tennessee viruses compared to California was calculated using BioEdit.
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clustalw multiple sequence alignment program macvector 6.5  (MacVector inc)
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MacVector inc clustalw multiple sequence alignment program macvector 6.5
The GenBank sequences of the NA of Solomon, Brisbane, Tennessee and California were aligned using the <t>clustalW</t> alignment program (BioEdit software, Windows 95/98/NT). Numbers to the left of each line indicates amino acid position. Gaps in the alignment are represented as dashed lines. A) Sequences that are shaded in grey indicate identical amino acids between the full length NA of H1N1 viruses. The black arrow indicates the starting sequences of the ectodomain for each virus strain (residue 82 to end).* assumption that the NA sequence of Solomon has identical residues at C-terminus. B) The percent identity of the NA ectodomain between Solomon, Brisbane, Tennessee viruses compared to California was calculated using BioEdit.
Clustalw Multiple Sequence Alignment Program Macvector 6.5, supplied by MacVector inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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clustalw module of bioedit sequence alignment tool  (Bioedit Company)
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Bioedit Company clustalw module of bioedit sequence alignment tool
The GenBank sequences of the NA of Solomon, Brisbane, Tennessee and California were aligned using the <t>clustalW</t> alignment program (BioEdit software, Windows 95/98/NT). Numbers to the left of each line indicates amino acid position. Gaps in the alignment are represented as dashed lines. A) Sequences that are shaded in grey indicate identical amino acids between the full length NA of H1N1 viruses. The black arrow indicates the starting sequences of the ectodomain for each virus strain (residue 82 to end).* assumption that the NA sequence of Solomon has identical residues at C-terminus. B) The percent identity of the NA ectodomain between Solomon, Brisbane, Tennessee viruses compared to California was calculated using BioEdit.
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clustalw multiple alignment accessory application using the bioedit software  (Bioedit Company)
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The GenBank sequences of the NA of Solomon, Brisbane, Tennessee and California were aligned using the <t>clustalW</t> alignment program (BioEdit software, Windows 95/98/NT). Numbers to the left of each line indicates amino acid position. Gaps in the alignment are represented as dashed lines. A) Sequences that are shaded in grey indicate identical amino acids between the full length NA of H1N1 viruses. The black arrow indicates the starting sequences of the ectodomain for each virus strain (residue 82 to end).* assumption that the NA sequence of Solomon has identical residues at C-terminus. B) The percent identity of the NA ectodomain between Solomon, Brisbane, Tennessee viruses compared to California was calculated using BioEdit.
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multiple sequence alignment bioedit 7.2 clustalw  (Bioedit Company)
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The GenBank sequences of the NA of Solomon, Brisbane, Tennessee and California were aligned using the <t>clustalW</t> alignment program (BioEdit software, Windows 95/98/NT). Numbers to the left of each line indicates amino acid position. Gaps in the alignment are represented as dashed lines. A) Sequences that are shaded in grey indicate identical amino acids between the full length NA of H1N1 viruses. The black arrow indicates the starting sequences of the ectodomain for each virus strain (residue 82 to end).* assumption that the NA sequence of Solomon has identical residues at C-terminus. B) The percent identity of the NA ectodomain between Solomon, Brisbane, Tennessee viruses compared to California was calculated using BioEdit.
Multiple Sequence Alignment Bioedit 7.2 Clustalw, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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clustalw multiple sequence alignment v7.0.9  (Bioedit Company)
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Bioedit Company clustalw multiple sequence alignment v7.0.9
The GenBank sequences of the NA of Solomon, Brisbane, Tennessee and California were aligned using the <t>clustalW</t> alignment program (BioEdit software, Windows 95/98/NT). Numbers to the left of each line indicates amino acid position. Gaps in the alignment are represented as dashed lines. A) Sequences that are shaded in grey indicate identical amino acids between the full length NA of H1N1 viruses. The black arrow indicates the starting sequences of the ectodomain for each virus strain (residue 82 to end).* assumption that the NA sequence of Solomon has identical residues at C-terminus. B) The percent identity of the NA ectodomain between Solomon, Brisbane, Tennessee viruses compared to California was calculated using BioEdit.
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clustalw protein sequence alignments  (Accelrys)
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Accelrys clustalw protein sequence alignments
The amino acid sequences of known and predicted serotonin receptors were aligned using the <t>ClustalW</t> method and a Neighbor-Joining Best Tree was constructed from the alignment. The alignment included representative examples of all major classes of serotonergic GPCRs but only three clades are shown for simplicity. These include type 2 serotonin receptors (5HT2), type 7 (5HT7) and structurally related type 1 and type 5 receptors (5HT1/5). The outgroup in the alignment (not shown) was a distantly related rat metabotropic glutamate receptor (NP_058707). The tree was rooted to the outgroup and was tested by bootstrap analysis with 1000 iterations. The length of the branches is proportional to the genetic distance between sequences. Sequences were all obtained from the National Center for Biotechnology Information (NCBI). S. mansoni sequences are designated by their S. mansoni GeneDB “smp”designation number and are marked by arrows. Accession numbers for the remaining sequences are as follows: 5HT2_Drosophila (NP_730859); 5HT2_Lymnae (AAC16969.1), 5HT2(ser-1)_C. elegans (AAC15778); 5HT2B_Xenopus (NP_001082744); 5HT2A_human (NP_000612); 5HT2A_mouse (NP_766400); 5HT2B_human (NP_000858); 5HT2C_human (NP_000859); 5HT5B_mouse (NP_034613.2); 5HT5A_human (NP_076917.1); 5HT1_Helisoma (AAQ95277.1); 5HT1A_Xenopus (NP_001079299.1); 5HT1A_human (NP_000515.2); 5HT1A_chicken (NP_001163999.1); 5HT1D_dog (P11614); 5HT1A_pufferfish (O42385); 5HT1_Aplysia (NP_001191550); 5HT1(ser-4)_C. elegans (NP_497452); 5HT_Haemonchus (AAO45883); 5HT7_Xenopus (NP_001079253.1); 5HT7_human (NP_062873.1); 5HT7_chicken (NP_001167605.1) 5HT7_Helisoma (AAQ84306.1); 5HT7_Meleagris (XP_003206102); 5HT7_zebrafish (XP_690599); 5HT7_Clonorchis (GAA29051); 5HT7_Aedes (AF296125); 5HT7 (ser-7)_C. elegans (NP_741730); 5HT_Dugesia.1 (BAA22404); 5HT_Dugesia.4 (BAA22403); 5HT7_Dugesia (BAI44327.1); 5HT4_chicken (XP_414481.2); 5HT4_human (NP_000861.1); 5HT6_chicken (NP_001166911.1); 5HT6_human (NP_000862.1); 5HT6_mouse (NP_067333.1); ratmGlu.8393487; mGluR1_rat (NP_058707).
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clustalw module sequence alignment tool (version 7.1.3.0  (Bioedit Company)
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Bioedit Company clustalw module sequence alignment tool (version 7.1.3.0
The amino acid sequences of known and predicted serotonin receptors were aligned using the <t>ClustalW</t> method and a Neighbor-Joining Best Tree was constructed from the alignment. The alignment included representative examples of all major classes of serotonergic GPCRs but only three clades are shown for simplicity. These include type 2 serotonin receptors (5HT2), type 7 (5HT7) and structurally related type 1 and type 5 receptors (5HT1/5). The outgroup in the alignment (not shown) was a distantly related rat metabotropic glutamate receptor (NP_058707). The tree was rooted to the outgroup and was tested by bootstrap analysis with 1000 iterations. The length of the branches is proportional to the genetic distance between sequences. Sequences were all obtained from the National Center for Biotechnology Information (NCBI). S. mansoni sequences are designated by their S. mansoni GeneDB “smp”designation number and are marked by arrows. Accession numbers for the remaining sequences are as follows: 5HT2_Drosophila (NP_730859); 5HT2_Lymnae (AAC16969.1), 5HT2(ser-1)_C. elegans (AAC15778); 5HT2B_Xenopus (NP_001082744); 5HT2A_human (NP_000612); 5HT2A_mouse (NP_766400); 5HT2B_human (NP_000858); 5HT2C_human (NP_000859); 5HT5B_mouse (NP_034613.2); 5HT5A_human (NP_076917.1); 5HT1_Helisoma (AAQ95277.1); 5HT1A_Xenopus (NP_001079299.1); 5HT1A_human (NP_000515.2); 5HT1A_chicken (NP_001163999.1); 5HT1D_dog (P11614); 5HT1A_pufferfish (O42385); 5HT1_Aplysia (NP_001191550); 5HT1(ser-4)_C. elegans (NP_497452); 5HT_Haemonchus (AAO45883); 5HT7_Xenopus (NP_001079253.1); 5HT7_human (NP_062873.1); 5HT7_chicken (NP_001167605.1) 5HT7_Helisoma (AAQ84306.1); 5HT7_Meleagris (XP_003206102); 5HT7_zebrafish (XP_690599); 5HT7_Clonorchis (GAA29051); 5HT7_Aedes (AF296125); 5HT7 (ser-7)_C. elegans (NP_741730); 5HT_Dugesia.1 (BAA22404); 5HT_Dugesia.4 (BAA22403); 5HT7_Dugesia (BAI44327.1); 5HT4_chicken (XP_414481.2); 5HT4_human (NP_000861.1); 5HT6_chicken (NP_001166911.1); 5HT6_human (NP_000862.1); 5HT6_mouse (NP_067333.1); ratmGlu.8393487; mGluR1_rat (NP_058707).
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clustalw using bioedit sequence alignment editor v. 4.8.8  (Bioedit Company)
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The amino acid sequences of known and predicted serotonin receptors were aligned using the <t>ClustalW</t> method and a Neighbor-Joining Best Tree was constructed from the alignment. The alignment included representative examples of all major classes of serotonergic GPCRs but only three clades are shown for simplicity. These include type 2 serotonin receptors (5HT2), type 7 (5HT7) and structurally related type 1 and type 5 receptors (5HT1/5). The outgroup in the alignment (not shown) was a distantly related rat metabotropic glutamate receptor (NP_058707). The tree was rooted to the outgroup and was tested by bootstrap analysis with 1000 iterations. The length of the branches is proportional to the genetic distance between sequences. Sequences were all obtained from the National Center for Biotechnology Information (NCBI). S. mansoni sequences are designated by their S. mansoni GeneDB “smp”designation number and are marked by arrows. Accession numbers for the remaining sequences are as follows: 5HT2_Drosophila (NP_730859); 5HT2_Lymnae (AAC16969.1), 5HT2(ser-1)_C. elegans (AAC15778); 5HT2B_Xenopus (NP_001082744); 5HT2A_human (NP_000612); 5HT2A_mouse (NP_766400); 5HT2B_human (NP_000858); 5HT2C_human (NP_000859); 5HT5B_mouse (NP_034613.2); 5HT5A_human (NP_076917.1); 5HT1_Helisoma (AAQ95277.1); 5HT1A_Xenopus (NP_001079299.1); 5HT1A_human (NP_000515.2); 5HT1A_chicken (NP_001163999.1); 5HT1D_dog (P11614); 5HT1A_pufferfish (O42385); 5HT1_Aplysia (NP_001191550); 5HT1(ser-4)_C. elegans (NP_497452); 5HT_Haemonchus (AAO45883); 5HT7_Xenopus (NP_001079253.1); 5HT7_human (NP_062873.1); 5HT7_chicken (NP_001167605.1) 5HT7_Helisoma (AAQ84306.1); 5HT7_Meleagris (XP_003206102); 5HT7_zebrafish (XP_690599); 5HT7_Clonorchis (GAA29051); 5HT7_Aedes (AF296125); 5HT7 (ser-7)_C. elegans (NP_741730); 5HT_Dugesia.1 (BAA22404); 5HT_Dugesia.4 (BAA22403); 5HT7_Dugesia (BAI44327.1); 5HT4_chicken (XP_414481.2); 5HT4_human (NP_000861.1); 5HT6_chicken (NP_001166911.1); 5HT6_human (NP_000862.1); 5HT6_mouse (NP_067333.1); ratmGlu.8393487; mGluR1_rat (NP_058707).
Clustalw Using Bioedit Sequence Alignment Editor V. 4.8.8, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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clustalw accessory application in bioedit sequence alignment editor version 7.2.5  (Bioedit Company)
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Bioedit Company clustalw accessory application in bioedit sequence alignment editor version 7.2.5
The amino acid sequences of known and predicted serotonin receptors were aligned using the <t>ClustalW</t> method and a Neighbor-Joining Best Tree was constructed from the alignment. The alignment included representative examples of all major classes of serotonergic GPCRs but only three clades are shown for simplicity. These include type 2 serotonin receptors (5HT2), type 7 (5HT7) and structurally related type 1 and type 5 receptors (5HT1/5). The outgroup in the alignment (not shown) was a distantly related rat metabotropic glutamate receptor (NP_058707). The tree was rooted to the outgroup and was tested by bootstrap analysis with 1000 iterations. The length of the branches is proportional to the genetic distance between sequences. Sequences were all obtained from the National Center for Biotechnology Information (NCBI). S. mansoni sequences are designated by their S. mansoni GeneDB “smp”designation number and are marked by arrows. Accession numbers for the remaining sequences are as follows: 5HT2_Drosophila (NP_730859); 5HT2_Lymnae (AAC16969.1), 5HT2(ser-1)_C. elegans (AAC15778); 5HT2B_Xenopus (NP_001082744); 5HT2A_human (NP_000612); 5HT2A_mouse (NP_766400); 5HT2B_human (NP_000858); 5HT2C_human (NP_000859); 5HT5B_mouse (NP_034613.2); 5HT5A_human (NP_076917.1); 5HT1_Helisoma (AAQ95277.1); 5HT1A_Xenopus (NP_001079299.1); 5HT1A_human (NP_000515.2); 5HT1A_chicken (NP_001163999.1); 5HT1D_dog (P11614); 5HT1A_pufferfish (O42385); 5HT1_Aplysia (NP_001191550); 5HT1(ser-4)_C. elegans (NP_497452); 5HT_Haemonchus (AAO45883); 5HT7_Xenopus (NP_001079253.1); 5HT7_human (NP_062873.1); 5HT7_chicken (NP_001167605.1) 5HT7_Helisoma (AAQ84306.1); 5HT7_Meleagris (XP_003206102); 5HT7_zebrafish (XP_690599); 5HT7_Clonorchis (GAA29051); 5HT7_Aedes (AF296125); 5HT7 (ser-7)_C. elegans (NP_741730); 5HT_Dugesia.1 (BAA22404); 5HT_Dugesia.4 (BAA22403); 5HT7_Dugesia (BAI44327.1); 5HT4_chicken (XP_414481.2); 5HT4_human (NP_000861.1); 5HT6_chicken (NP_001166911.1); 5HT6_human (NP_000862.1); 5HT6_mouse (NP_067333.1); ratmGlu.8393487; mGluR1_rat (NP_058707).
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Image Search Results


The GenBank sequences of the NA of Solomon, Brisbane, Tennessee and California were aligned using the clustalW alignment program (BioEdit software, Windows 95/98/NT). Numbers to the left of each line indicates amino acid position. Gaps in the alignment are represented as dashed lines. A) Sequences that are shaded in grey indicate identical amino acids between the full length NA of H1N1 viruses. The black arrow indicates the starting sequences of the ectodomain for each virus strain (residue 82 to end).* assumption that the NA sequence of Solomon has identical residues at C-terminus. B) The percent identity of the NA ectodomain between Solomon, Brisbane, Tennessee viruses compared to California was calculated using BioEdit.

Journal: PLoS ONE

Article Title: A Contributing Role for Anti-Neuraminidase Antibodies on Immunity to Pandemic H1N1 2009 Influenza A Virus

doi: 10.1371/journal.pone.0026335

Figure Lengend Snippet: The GenBank sequences of the NA of Solomon, Brisbane, Tennessee and California were aligned using the clustalW alignment program (BioEdit software, Windows 95/98/NT). Numbers to the left of each line indicates amino acid position. Gaps in the alignment are represented as dashed lines. A) Sequences that are shaded in grey indicate identical amino acids between the full length NA of H1N1 viruses. The black arrow indicates the starting sequences of the ectodomain for each virus strain (residue 82 to end).* assumption that the NA sequence of Solomon has identical residues at C-terminus. B) The percent identity of the NA ectodomain between Solomon, Brisbane, Tennessee viruses compared to California was calculated using BioEdit.

Article Snippet: To determine the percent homology between each seasonal and pandemic ectodomain sequences, a clustalW amino acid sequence alignment was performed as described previously (BioEdit Sequence alignment editor version 7.0.9 for, Windows 95/98/NT).

Techniques: Software, Virus, Residue, Sequencing

The amino acid sequences of known and predicted serotonin receptors were aligned using the ClustalW method and a Neighbor-Joining Best Tree was constructed from the alignment. The alignment included representative examples of all major classes of serotonergic GPCRs but only three clades are shown for simplicity. These include type 2 serotonin receptors (5HT2), type 7 (5HT7) and structurally related type 1 and type 5 receptors (5HT1/5). The outgroup in the alignment (not shown) was a distantly related rat metabotropic glutamate receptor (NP_058707). The tree was rooted to the outgroup and was tested by bootstrap analysis with 1000 iterations. The length of the branches is proportional to the genetic distance between sequences. Sequences were all obtained from the National Center for Biotechnology Information (NCBI). S. mansoni sequences are designated by their S. mansoni GeneDB “smp”designation number and are marked by arrows. Accession numbers for the remaining sequences are as follows: 5HT2_Drosophila (NP_730859); 5HT2_Lymnae (AAC16969.1), 5HT2(ser-1)_C. elegans (AAC15778); 5HT2B_Xenopus (NP_001082744); 5HT2A_human (NP_000612); 5HT2A_mouse (NP_766400); 5HT2B_human (NP_000858); 5HT2C_human (NP_000859); 5HT5B_mouse (NP_034613.2); 5HT5A_human (NP_076917.1); 5HT1_Helisoma (AAQ95277.1); 5HT1A_Xenopus (NP_001079299.1); 5HT1A_human (NP_000515.2); 5HT1A_chicken (NP_001163999.1); 5HT1D_dog (P11614); 5HT1A_pufferfish (O42385); 5HT1_Aplysia (NP_001191550); 5HT1(ser-4)_C. elegans (NP_497452); 5HT_Haemonchus (AAO45883); 5HT7_Xenopus (NP_001079253.1); 5HT7_human (NP_062873.1); 5HT7_chicken (NP_001167605.1) 5HT7_Helisoma (AAQ84306.1); 5HT7_Meleagris (XP_003206102); 5HT7_zebrafish (XP_690599); 5HT7_Clonorchis (GAA29051); 5HT7_Aedes (AF296125); 5HT7 (ser-7)_C. elegans (NP_741730); 5HT_Dugesia.1 (BAA22404); 5HT_Dugesia.4 (BAA22403); 5HT7_Dugesia (BAI44327.1); 5HT4_chicken (XP_414481.2); 5HT4_human (NP_000861.1); 5HT6_chicken (NP_001166911.1); 5HT6_human (NP_000862.1); 5HT6_mouse (NP_067333.1); ratmGlu.8393487; mGluR1_rat (NP_058707).

Journal: PLoS Pathogens

Article Title: Serotonin Signaling in Schistosoma mansoni : A Serotonin–Activated G Protein-Coupled Receptor Controls Parasite Movement

doi: 10.1371/journal.ppat.1003878

Figure Lengend Snippet: The amino acid sequences of known and predicted serotonin receptors were aligned using the ClustalW method and a Neighbor-Joining Best Tree was constructed from the alignment. The alignment included representative examples of all major classes of serotonergic GPCRs but only three clades are shown for simplicity. These include type 2 serotonin receptors (5HT2), type 7 (5HT7) and structurally related type 1 and type 5 receptors (5HT1/5). The outgroup in the alignment (not shown) was a distantly related rat metabotropic glutamate receptor (NP_058707). The tree was rooted to the outgroup and was tested by bootstrap analysis with 1000 iterations. The length of the branches is proportional to the genetic distance between sequences. Sequences were all obtained from the National Center for Biotechnology Information (NCBI). S. mansoni sequences are designated by their S. mansoni GeneDB “smp”designation number and are marked by arrows. Accession numbers for the remaining sequences are as follows: 5HT2_Drosophila (NP_730859); 5HT2_Lymnae (AAC16969.1), 5HT2(ser-1)_C. elegans (AAC15778); 5HT2B_Xenopus (NP_001082744); 5HT2A_human (NP_000612); 5HT2A_mouse (NP_766400); 5HT2B_human (NP_000858); 5HT2C_human (NP_000859); 5HT5B_mouse (NP_034613.2); 5HT5A_human (NP_076917.1); 5HT1_Helisoma (AAQ95277.1); 5HT1A_Xenopus (NP_001079299.1); 5HT1A_human (NP_000515.2); 5HT1A_chicken (NP_001163999.1); 5HT1D_dog (P11614); 5HT1A_pufferfish (O42385); 5HT1_Aplysia (NP_001191550); 5HT1(ser-4)_C. elegans (NP_497452); 5HT_Haemonchus (AAO45883); 5HT7_Xenopus (NP_001079253.1); 5HT7_human (NP_062873.1); 5HT7_chicken (NP_001167605.1) 5HT7_Helisoma (AAQ84306.1); 5HT7_Meleagris (XP_003206102); 5HT7_zebrafish (XP_690599); 5HT7_Clonorchis (GAA29051); 5HT7_Aedes (AF296125); 5HT7 (ser-7)_C. elegans (NP_741730); 5HT_Dugesia.1 (BAA22404); 5HT_Dugesia.4 (BAA22403); 5HT7_Dugesia (BAI44327.1); 5HT4_chicken (XP_414481.2); 5HT4_human (NP_000861.1); 5HT6_chicken (NP_001166911.1); 5HT6_human (NP_000862.1); 5HT6_mouse (NP_067333.1); ratmGlu.8393487; mGluR1_rat (NP_058707).

Article Snippet: ClustalW protein sequence alignments and the construction of a phylogenetic tree were performed using MacVector 7.1.1 (Accelrys, Inc).

Techniques: Construct